Manuscripts
A selection of recent papers published by the group:
Coles, V.J., M.R. Stukel, M.T. Brooks, A. Burd, B.C. Crump, M.A. Moran, J.H. Paul, B.M. Satinsky, P.L. Yager, B.L. Zielinski, R.R. Hood (2017). Ocean biogeochemistry modeled with emergent trait-based genomics. Science, 358:1149–1154, doi:10.1126/science.aan5712.
Jung, Y., A.B. Burd (2017). Seasonal changes in above- and below-ground non-structutrual carbohydrates (NSC) in Spartina alterniflora in a marsh in Georgia, USA. Aquatic Botany, 140:13–22, doi:10.1016/j.aquabot.2017.04.003.
Mari, X., U. Passow, C. Migon, A.B. Burd, L. Legendre (2017). Transparent exopolymer particles: Effects on carbon cycling in the ocean. Progress in Oceanography, 151:13–37, doi:10.1016/j.pocean.2016.11002.
Burd, A.B, S. Frey, A. Cabre, T. Ito, N.M. Levine, C. Lønborg, M. Long, M. Mauritz, R. Quinn Thomas, B.M. Stephens, T. Vanwelleghem, N. Zeng (2016). Terrestrial and marine perspectives on modeling organic matter degradation pathways. Global Change Biology, 22:121–136, doi:10.1111/gcb12987
Burd, A.B. (2013). Modeling particle aggregation using size class and size spectrum approaches. Journal of Geophysical Research Oceans, 118:3431–3443.
Burd, Adrian B., Dennis A. Hansell, Deborah K. Steinberg, Thomas R. Anderson, Javier Arístegui, Federico Baltar, Steven R. Beaupré, Ken O. Buesseler, Frank DeHairs, George A. Jackson, David C. Kadko, Rolf Koppelmann, Richard S. Lampitt, Toshi Nagata, Thomas Reinthaler, Carol Robinson, Bruce H. Robison, Christian Tamburini, TsuneoTanaka (2010). Assessing the Apparent Imbalance Between Geochemical and Biochemical Indicators of Meso- and Bathypelagic Biological Activity: What the @$#! is wrong with present calculations of carbon budgets? Deep-Sea Research II, 57:1557-1572.
Burd, A.B. and G.A. Jackson (2009). Particle aggregation. Annual Reviews of Marine Science, 1: 65-90.
Computer Code
In this group, we are dedicated to making our computer codes publicly available. Once a code has been developed and refined to a point where we think it is a) useful to others, and b) useable by others(!), we provide the code on our GitHub page. The following codes are currently available:
- Matlab particle aggregation code: A Matlab code that calculates the evolution of the particle size spectrum for particles in the marine environment.
- Matlab particle aggregation and thorium sorption code: A modification of the above code to allow for trace-metal adsorption.
- Matlab code for combining genomics and biogeochemistry: Code from our online paper Incorporating genomic information and predicting gene expression patterns in a simplified biogeochemical model.
The Burd Lab 